In contrast, for segment 3, these parameters were significantly lower between homB and

homA sequences within the same strain than among different strains (Table 2). Additionally, for segment 3, molecular distance and nucleotide substitution rates were similar within each gene and between genes, indicating a parallel evolution of this segment in both genes, while for segment 1 those parameters were higher between genes than within each gene, pointing to an independent and divergent evolution of this segment in each gene (Table 3). Analysis of segment 2 was not conclusive, since MM-102 price clustering of homB and homA sequences was related to the allelic variant of the gene (see below). Table 2 Analysis of molecular distances and synonymous and non-synonymous nucleotide

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interstrain vs intrastrain comparisons of Ka for homB and homA segment 3. Table 3 Analysis of molecular distances and synonymous and non-synonymous nucleotide substitutions in gene segments 1 and 3, within each gene (homB or homA alone) and between genes in different strains Rebamipide (homB vs homA), considering pairs of homB and homA sequences of 24 Helicobacter pylori strains.   Segment 1 (n = 24) Segment 3 (n = 24)   homBalonea homAalonea homBvshomA b homBalonea homAalonea homBvs homA b Mol. distance (nt) 0.061 ± 0.006& 0.077 ± 0.007 0.113 ± 0.010 0.066 ± 0.005 0.065 ± 0.005 0.064 ± 0.004 Ks 0.199 ± 0.025 0.244 ± 0.026 0.286 ± 0.034 0.209 ± 0.020 0.207 ± 0.020 0.202 ± 0.019 Ka 0.026 ± 0.005 0.030 ± 0.004 0.067 ± 0.011 0.027 ± 0.005 0.025 ± 0.004 0.026 ± 0.004 Ka/Ks 0.131 ± 0.029 0.122 ± 0.021 0.234 ± 0.047 0.129 ± 0.027 0.121 ± 0.021 0.130 ± 0.023 Mol., molecular nt, nucleotides Ks, Synonymous substitutions Ka, Non-synonymous substitutions &Value ± Standard Error. a The 24 sequences, totalling 276 comparisons.