influenzae on sBHI plates supplemented with bacitracin (0.3 g/L) and either streptomycin (4 mg/L) or nalidixic acid (5 mg/L). Infant Rat Model Although neonatal rats do not naturally carry S. aureus, S. pneumoniae and H. influenzae, they can be reproducibly colonized with these species. All animal experiments were performed under the guidelines approved by the Emory Institutional Animal Care and Use Committee. Three-day-old pups, born of timed-pregnant Sprague-Dawley rats (Charles River Laboratories), were randomly reassigned to dams. At 3 or 5 days of age, rats were intranasally inoculated by touching a drop of 102 – 108 bacteria of either S. aureus, S. pneumoniae

or H. influenzae (that had been spun down and re-suspended LY3039478 in 5 μl PBS supplemented with 0.1% gelatin (PBS-G)) to the right and then another 5 μl to the left external nares [45]. The nasal flora of un-inoculated neonatal rats, buy VX-689 determined

by colony morphology on blood plates, appeared to consist primarily of non-hemolytic streptococci and coagulase-negative staphylococci. No S. aureus, S. pneumoniae and H. influenzae colonies were isolated from un-inoculated neonatal rats and all of these strains colonized in spite of the presence of this nasal flora. Two days after the innoculation, nasal wash was collected from 200 μl of PBS-G instilled into a 5 cm intramedic polyetylene tubing (PE50, intramedic, Clay Adams) placed into the trachea, and nasal epithelium was scraped from the nasal passages after a second wash of 200 μl of PBSG and removal of the frontal bones. 3 sequential nasal washes of 200 μl of PBS-G contained no significant decrease in the bacteria density compared to the first wash. The nasal epithelium was homogenized in 1 ml of PBS-G. In all experiments, 100 μl of the nasal wash and nasal epithelium samples were plated directly and serially diluted onto selective plates. The limit for detection was 10 cfu/ml. Nasal wash densities were converted to cfu in rat by multiplying cfu/ml by 5 (200 uL total vol.) and nasal epithelium by multiplying by 1 (1 ml total vol.). With the exception of the H. influenzae -S. pneumoniae Endonuclease interaction, data from the nasal wash and

nasal epithelium data are in agreement and only the nasal epithelium data are presented; as nasal epithelium likely represents the Napabucasin research buy persistent colonizing population [22]. Experimental Design For the population dynamics of nasal colonization, groups of 4-16 5-day-old rats were intranasally inoculated with either 104 or 107 cfu bacteria of S. aureus, S. pneumoniae or H. influenzae and sampled 12-144 hours after inoculation. Inoculum independence was confirmed by inoculating groups of 7-16 5-day-old rats with 102- 108 cfu bacteria of S. aureus, S. pneumoniae or H. influenzae and sampling at 48 hours. For intra-species invasion, one marked variant of a particular strain was intranasally inoculated into two groups of 24-36 3-day-old rats.