Since our approach using MS2 database fragment matching alongside

exoglycosidase as illustrated above, generated very detailed information about oligosaccharide sequences, it was also investigated whether this approach could identify the specificity of exoglycosidases present in saliva. Investigation of complex degradation patterns of mucin oligosaccharides in biological fluids Inhibitors,research,lifescience,medical involves a mixture of glycosidases and their effect on a spectrum of oligosaccharides. The salivary mucins MUC5B and MUC7 were isolated by SDS-AgPAGE (Figure 4a) and blotted onto PVDF membranes. The blots were treated with saliva and control saliva (saliva boiled for 15 minutes) isolated from a healthy individual. The blots were washed and oligosaccharides Inhibitors,research,lifescience,medical were released by reductive β-elimination and analyzed by LC-MS [18]. The

cisplatin mechanism of action structures identified with and without the salivary treatments were assigned by comparison of MS2 spectral intensity correlation with LY-3009104 spectra reported in the MS2 database UniCarb-DB [16]. The assignment of the structures showed that the untreated samples were highly sialylated, while the increase in the intensity of neutral structures after treatment suggested that Inhibitors,research,lifescience,medical these were the exoglycosidase products generated after removal of sialic acid (Figure 4a). This indicated

that either there is an endogenous sialidase or a battery of sialidases, with similar specificities from different micoorganisms, is responsible for Inhibitors,research,lifescience,medical most of the exoglycosidase activity in saliva. This was also suggested by the average composition (MSAC= mass spectrometric average composition, [27]) of the Inhibitors,research,lifescience,medical oligosaccharide based on the mass spectrometric intensities (Figure 4b). Figure 4 (a) Enrichment of salivary glycoproteins MUC5B and MUC7 by SDS-AgPAGE with their negative ion baseline chromatograms of MUC5B and MUC7 oligosaccharides before (front black) and after (back grey) the treatment with saliva. (b) The average composition of … As was shown with the synovial lubricin sialylation, there were few linkage-specific fragments available in the MS2 fragments of sialylated structures. The spectra were also dominated Drug_discovery by the loss of sialic acid from the parent ion (Figure 4c). The nature of the fragmentation of sialylated structures made some of the MS2 spectral intensities not decisive when compared with spectra reported in the MS2 database UniCarb-DB (Table 1), while after salivary sialidase, the spectra of neutral oligosaccharides include information about core and linkage type as well as the nature of fucose substitution [8] and better scoring with spectral matching.