The sample S3 showed high diversity of novel isolates with presence of 4 novel isolates closely related to Parabacteroides distasonis, Megasphaera elsdenii, Clostridium subterminale, Bacteroides fragilis respectively. This suggests that there is difference in culturable anaerobic bacteria diversity with age within individuals
in a family. Table 2 Identification of obligate anaerobic isolates by 16 S rRNA gene sequence analysis Sample Isolate Closest BLAST hit Percent similarity Gene bank accession numbers S2 SLPYG 1 Bifidobacteria adolescentis 97% JN389522 (8 months) SLPYG 2 Parabacteroides Capmatinib supplier distasonis 99% JN038555 SLPYG 3 Parabacteroides distasonis 99% JN038556 SLBE 4 Parabacteroides distasonis 99% JN038557 SLBE 5 Parabacteroides distasonis 99% JN038558 S1 VLPYG 2 Clostridium subterminale 99% JN093125 (26 years) VLPYG 3 Bacteroides vulgates 99% JN084207 VLPYG 4 Parabacteroides distasonis 99% JN038554 VLPYG 5 Clostridium difficile 96% JN093126 selleckchem VLPYG 6 Clostridium mangenotii 98% JN093127 VLBE 7 Bacteroides fragilis 99% JN084198 VLBE 8 Bacteroides thetaiotaomicron 99% JN084201 VLBE 9 Bacteroides thetaiotaomicron 99% JN084202 S3 BLBE 1 Parabacteroides distasonis 97% JN038559 (56 years) BLBE 2 Bacteroides ovatus 98% JN084211 BLPYG 5 Bacteroides uniformis 99% JN084205 BLBE 6
Bacteroides xylanisolvens 99% JN084212 BLPYG 7 Megasphaera elsdenii 97% HM990964 BLPYG 8 Clostridium subterminale 96% JN093128 BLPYG 9 Bacteroides fragilis 97% JN084199 BLBE 11 Parabacteroides distasonis 99% JN038560 BLBE 12 Parabacteroides distasonis 99% JN038561 Biochemical characteristics of the isolates 4-Aminobutyrate aminotransferase were analyzed using BIOLOGTM. The isolates
were grouped in 5 different phenotypes based on obtained characteristics. The identifications and accession numbers of the Selleckchem AZD4547 16SrRNA gene sequence of the isolates are represented in Table 2. DGGE analysis The DGGE analysis revealed the difference in gut flora composition of individuals of different age belonging to the same family as shown in Figure 1. The band intensity and number of bands observed in DGGE profile of samples suggests that different bacterial species are dominating the gut flora of individuals of varying age. Figure 1 DGGE analysis of the stool DNA, denaturation gradient 40%-60%. Family S: S1 (26 years), S2 (8 months), S3 (56 years) and Family T: T1 (14 years), T2 (42 years), T3 (62 years). Legend : Lane 1- S2, lane 2- S1, lane 3- S3, lane 4- T1, lane 5- T2, lane 6- T3. Clone library analysis Total 960 clone sequences from the 6 clone libraries were obtained and analyzed. The sequences are submitted to NCBI with accession numbers from JQ264784 to JQ265743.